Publications

2012

Adeyanju O, Okou DT, Huang C, Kumar A, Sauer C, Galloway C, Prasad M, Waters J, Cutler DJ, Zwick ME, Dhere T, Kugathasan S. 2012. Common NOD2 risk variants in African Americans with Crohn’s disease are due exclusively to recent Caucasian admixture. Inflamm Bowel Dis 18: 2357-2359. PMC3392535.
Steinberg KM, Ramachandran D, Patel VC, Shetty AC, Cutler DJ, Zwick ME. 2012. Identification of rare X-linked neuroligin variants by massively parallel sequencing in males with autism spectrum disorder. Mol Autism 3: 8. PMC3492087.
Sun M, Mondal K, Patel V, Horner VL, Long AB, Cutler DJ, Caspary T, Zwick ME. 2012. Multiplex Chromosomal Exome Sequencing Accelerates Identification of ENU-Induced Mutations in the Mouse. G3 (Bethesda) 2: 143-150. PMC3276189.
Mondal K, Ramachandran D, Patel VC, Hagen KR, Bose P, Cutler DJ, Zwick ME. 2012. Excess variants in AFF2 detected by massively parallel sequencing of males with autism spectrum disorder. Hum Mol Genet 21: 4356-4364. PMC3441129.

2011

Mondal K, Shetty AC, Patel V, Cutler DJ, Zwick ME. 2011. Targeted sequencing of the human X chromosome exome. Genomics 98: 260-265. PMC3154473.
He M, Kratz LE, Michel JJ, Vallejo AN, Ferris L, Kelley RI, Hoover JJ, Jukic D, Gibson KM, Wolfe LA, Ramachandran D, Zwick ME, Vockley J (2011) Mutations in the human SC4MOL gene encoding a methyl sterol oxidase cause psoriasiform dermatitis, microcephaly, and developmental delay. The Journal of Clinical Investigation.

2010

Patel VC, Mondal K, Shetty AC, Horner Vl, Bedoyan JK, Martin D, Caspary T, Cutler DJ, Zwick ME (2010) Microarray oligonucleotide probe designer (MOPeD): A web service. Open Access Bioinformatics 2010.02: 144-55. PMC: In progress.
Shetty AC, Athri P, Mondal K, Horner VL, Steinberg KM, Patel V, Caspary T, Cutler DJ, Zwick ME (2010) SeqAnt: a web service to rapidly identify and annotate DNA sequence variations. BMC Bioinformatics 11: 471. PMC2955049.
Collins, SC, Bray, SM, Suhl, JA, Cutler, DJ, Coffee, B, Zwick, ME, Warren, ST. Identification of novel FMR1 variants by massively parallel sequencing in developmentally delayed males. Am Jour Med Genetics, DOI: 10.1002/ajmg.a.33626 (2010).
Chen, PE, Willner, KM, Butani, A, Dorsey, S, George, M, Stewart, A, Lentz, SM, Cook, CE, Akmal, A, Price, LB, Keim, PS, Mateczun, A, Brahmbhatt, TN, Bishop-Lilly, KA, Zwick, ME, Read, TD, Sozhamannan, S. Rapid Identification of Genetic Modifications in Bacillus anthracis Using Whole Genome Draft Sequences Generated By Shotgun Pyrosequencing. PLoS One, vol.5 (8) (2010).
Mulle, JG, Patel, VC, Warren, ST, Hegde, MR, Cutler, DJ, Zwick, ME. Empirical evaluation of oligonucleotide probe selection for DNA microarrays. PLoS One, 5, e9921 (2010).
Collins, SC, Benke, PJ, Berry-Kravis, E, Gilbert, F, Oostra, B, Zwick, ME, Cutler, DJ, Warren, ST. Array-based FMR1 sequencing and deletion analysis in patients with a fragile X syndrome-like phenotype. PLoS One 5, e9476 (2010).
Tang, J, Le, S, Sun, L, Yan, X, Zhang, M, MacLeod, J, LeRoy, B, Northrup, N, Ellis, A, Yeatman, TJ, Liang, Y, Zwick, ME, Zhao, S. Copy number abnormalities in sporadic canine colorectal cancers. Genome Research, 20, 341-350 (2010).
Chen, P.E., Cook, C., Stewart, A.C., Nagarajan, N., Sommer, D.D., Pop, M., Thomason, B., Kiley, M.P., Lentz, S., Nolan, N., Sozhamannan, S., Sulakvelidze, A., Mateczun, A., Du, L., Zwick, M.E., and Read, T.D. Genomic characterization of the Yersinia genus. Genome Biology, 11(1): p. R1 (2010).

2009

Okou, DT, Locke, AE, Steinberg, KM, Hagen, K, Athri, P, Shetty, AC, Patel, V, Zwick, ME. Combining microarray-based genomic selection (MGS) with the Illumina Genome Analyzer platform to sequence diploid target regions. Annals of Human Genetics, epub 2009/07/04 (2009).
Passalacqua, KD, Varadarajan, A, Ondov, BD, Okou, DT, Zwick, ME, Bergman, NH. The structure and complexity of a bacterial transcriptome. Journal of Bacteriology, 191(10):3203-11 (2009).

2008

Hegde, MR, Chin, ELH, Mulle, JG, Okou, DT, Warren, ST, Zwick, ME. Microarray-based mutation detection in the dystrophin gene. Human Mutation, 29(9): 1091-99 (2008).
Zwick, ME, Kiley, MP, Stewart, AC, Read, TD. Genotyping of Bacillus cereus strains by microarray-based resequencing. PLoS One 3(7) e2513 (2008).
Steinberg, KM, Okou, DT, and Zwick, ME. Applying rapid genome sequencing technologies to characterize pathogen genomes. Analytical Chemistry 80(3): p. 520-528 (2008).

2007

Okou, DT, Steinberg, KM, Middle, C, Cutler, DJ, Albert, TJ, Zwick, ME. Microarray-based genomic selection for high throughput resequencing. Nature Methods 4(11): 907-9 (2007).

2005

Zwick, ME. A genome sequencing center in every lab. European Journal of Human Genetics 13: 1167-1168 (2005).
Zwick, ME, Mcafee, F, Cutler, DJ, Read, TD, Ravel, J, Bowman, GR, Galloway, DR, Mateczun, A. Microarray-based resequencing of multiple B. anthracis isolates. Genome Biology 6(1): p. R10 (2005).

2004

Mitchell AA, Zwick, ME, Chakravarti, A, Cutler, DJ. Discrepancies in dbSNP confirmation rates and allele frequency distributions from varying genotyping error rates and patterns. Bioinformatics 20(7): 1022-32 (2004).

2000

Cutler, DJ, Zwick, ME, Carrasquillo, MM, Yohn, CT, Tobin, KP, Kashuk, C, Mathews, DJ, Shah, NA, Eichler, EE, Warrington, JA, Chakravarti, A. High-throughput variation detection and genotyping using microarrays. Genome Research 11(11): 1913-25 (2001).
Zwick, ME, Cutler, DJ, Chakravarti, A. Patterns of genetic variation in Mendelian and complex traits. Annual Review of Genomics and Human Genetics 1: 387-407 (2000).

1999


Zwick, ME, Salstrom, JL, Langley, CH. Genetic variation in rates of nondisjunction: association of two naturally occurring polymorphisms in the chromokinesin nod with increased rates of nondisjunction in Drosophila melanogaster. Genetics 152: 1605-1614 (1999).
Zwick, ME, Cutler, DJ, Langley, CH. Classic Weinstein: tetrad analysis, genetic variation and achiasmate segregation in drosophila and humans. Genetics 152: 1615-1629 (1999).

1994

Boyce, TM,Zwick, ME, Aquadro, CF.Mitochondrial DNA in the bark weevils:phylogeny and evolution in the Pissodes strobi species group (Coleoptera: Curculionidae). Molecular Biology and Evolution 11(2):183-194 (1994).

1989

Boyce, TM, Zwick, ME, Aquadro, CF.Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy. Genetics 123:825-836 (1989).